SeqAnn
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SeqAnn
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Annotation Algorithm
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seqann package
seqann models
seqann.feature_client package
seqann.feature_client.apis package
seqann.feature_client.models package
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SeqAnn
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Index
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C
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D
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E
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V
A
accession (seqann.feature_client.models.feature.Feature attribute)
add_alignment() (seqann.sequence_annotation.BioSeqAnn method)
align_seqs() (in module seqann.align)
aligned (seqann.models.annotation.Annotation attribute)
alignments (seqann.models.reference_data.ReferenceData attribute)
alleles (seqann.models.blast.Blast attribute)
ambig (seqann.models.annotation.Annotation attribute)
annotate() (seqann.sequence_annotation.BioSeqAnn method)
Annotation (class in seqann.models.annotation)
annotation (seqann.models.annotation.Annotation attribute)
ApiClient (class in seqann.feature_client.api_client)
ApiException
B
BioSeqAnn (class in seqann.sequence_annotation)
Blast (class in seqann.models.blast)
blastdb (seqann.models.reference_data.ReferenceData attribute)
blastn() (in module seqann.blast_cmd)
blocks (seqann.models.annotation.Annotation attribute)
C
call_api() (seqann.feature_client.api_client.ApiClient method)
check_annotation() (seqann.models.annotation.Annotation method)
clean() (seqann.models.annotation.Annotation method)
complete_annotation (seqann.models.annotation.Annotation attribute)
Configuration() (in module seqann.feature_client.configuration)
count_diffs() (in module seqann.align)
covered (seqann.models.annotation.Annotation attribute)
create_feature() (seqann.feature_client.apis.features_api.FeaturesApi method)
create_feature_with_http_info() (seqann.feature_client.apis.features_api.FeaturesApi method)
D
datafile (seqann.models.reference_data.ReferenceData attribute)
dbversion (seqann.models.reference_data.ReferenceData attribute)
DELETE() (seqann.feature_client.rest.RESTClientObject method)
deserialize() (seqann.feature_client.api_client.ApiClient method)
download_dat() (in module seqann.models.reference_data)
E
exact (seqann.models.annotation.Annotation attribute)
exact_match (seqann.models.annotation.Annotation attribute)
F
failed (seqann.models.blast.Blast attribute)
Feature (class in seqann.feature_client.models.feature)
feature_lengths (seqann.models.reference_data.ReferenceData attribute)
FeatureRequest (class in seqann.feature_client.models.feature_request)
features (seqann.models.annotation.Annotation attribute)
FeaturesApi (class in seqann.feature_client.apis.features_api)
find_features() (in module seqann.align)
flatten() (in module seqann.align)
from_dict() (seqann.models.annotation.Annotation class method)
(seqann.models.blast.Blast class method)
(seqann.models.reference_data.ReferenceData class method)
(seqann.seq_search.SeqSearch class method)
G
GET() (seqann.feature_client.rest.RESTClientObject method)
get_feature_by_path() (seqann.feature_client.apis.features_api.FeaturesApi method)
get_feature_by_path_with_http_info() (seqann.feature_client.apis.features_api.FeaturesApi method)
get_feature_by_query() (seqann.feature_client.apis.features_api.FeaturesApi method)
get_feature_by_query_with_http_info() (seqann.feature_client.apis.features_api.FeaturesApi method)
get_gfe() (seqann.gfe.GFE method)
get_locus() (in module seqann.blast_cmd)
getblocks() (in module seqann.seq_search)
(in module seqann.sequence_annotation)
getheader() (seqann.feature_client.rest.RESTResponse method)
getheaders() (seqann.feature_client.rest.RESTResponse method)
GFE (class in seqann.gfe)
gfe (seqann.models.annotation.Annotation attribute)
H
has_hla() (in module seqann.blast_cmd)
hash_code (seqann.feature_client.models.feature.Feature attribute)
HEAD() (seqann.feature_client.rest.RESTClientObject method)
hla_loci (seqann.models.reference_data.ReferenceData attribute)
hla_names (seqann.models.reference_data.ReferenceData attribute)
hlaref (seqann.models.reference_data.ReferenceData attribute)
K
kir (seqann.models.reference_data.ReferenceData attribute)
L
list_features() (seqann.feature_client.apis.features_api.FeaturesApi method)
list_features_0() (seqann.feature_client.apis.features_api.FeaturesApi method)
list_features_0_with_http_info() (seqann.feature_client.apis.features_api.FeaturesApi method)
list_features_1() (seqann.feature_client.apis.features_api.FeaturesApi method)
list_features_1_with_http_info() (seqann.feature_client.apis.features_api.FeaturesApi method)
list_features_with_http_info() (seqann.feature_client.apis.features_api.FeaturesApi method)
load_features() (seqann.gfe.GFE method)
loctype() (in module seqann.seq_search)
locus (seqann.feature_client.models.feature.Feature attribute)
(seqann.feature_client.models.feature_request.FeatureRequest attribute)
locus_features() (seqann.gfe.GFE method)
M
mapping (seqann.models.annotation.Annotation attribute)
match_seqs (seqann.models.blast.Blast attribute)
method (seqann.models.annotation.Annotation attribute)
missing (seqann.models.annotation.Annotation attribute)
O
OPTIONS() (seqann.feature_client.rest.RESTClientObject method)
P
PATCH() (seqann.feature_client.rest.RESTClientObject method)
POST() (seqann.feature_client.rest.RESTClientObject method)
prepare_post_parameters() (seqann.feature_client.api_client.ApiClient method)
PUT() (seqann.feature_client.rest.RESTClientObject method)
R
rank (seqann.feature_client.models.feature.Feature attribute)
(seqann.feature_client.models.feature_request.FeatureRequest attribute)
ref_align() (seqann.sequence_annotation.BioSeqAnn method)
ReferenceData (class in seqann.models.reference_data)
refmissing (seqann.models.annotation.Annotation attribute)
request() (seqann.feature_client.api_client.ApiClient method)
(seqann.feature_client.rest.RESTClientObject method)
resolve_feats() (in module seqann.align)
RESTClientObject (class in seqann.feature_client.rest)
RESTResponse (class in seqann.feature_client.rest)
S
sanitize_for_serialization() (seqann.feature_client.api_client.ApiClient method)
search_refdata() (seqann.models.reference_data.ReferenceData method)
search_seqs() (seqann.seq_search.SeqSearch method)
select_header_accept() (seqann.feature_client.api_client.ApiClient method)
select_header_content_type() (seqann.feature_client.api_client.ApiClient method)
seq (seqann.models.annotation.Annotation attribute)
seqann.align (module)
seqann.blast_cmd (module)
seqann.feature_client (module)
seqann.feature_client.api_client (module)
seqann.feature_client.apis (module)
seqann.feature_client.apis.features_api (module)
seqann.feature_client.configuration (module)
seqann.feature_client.models (module)
seqann.feature_client.models.feature (module)
seqann.feature_client.models.feature_request (module)
seqann.feature_client.rest (module)
seqann.gfe (module)
seqann.models.annotation (module)
seqann.models.blast (module)
seqann.models.reference_data (module)
seqann.seq_search (module)
seqann.sequence_annotation (module)
seqannotation() (seqann.models.reference_data.ReferenceData method)
seqrecord() (seqann.models.reference_data.ReferenceData method)
seqref (seqann.models.reference_data.ReferenceData attribute)
SeqSearch (class in seqann.seq_search)
sequence (seqann.feature_client.models.feature.Feature attribute)
(seqann.feature_client.models.feature_request.FeatureRequest attribute)
server (seqann.models.reference_data.ReferenceData attribute)
server_avail (seqann.models.reference_data.ReferenceData attribute)
set_default_header() (seqann.feature_client.api_client.ApiClient method)
singleton() (in module seqann.feature_client.configuration)
struct_order (seqann.models.reference_data.ReferenceData attribute)
structure (seqann.models.annotation.Annotation attribute)
structure_max (seqann.models.reference_data.ReferenceData attribute)
structures (seqann.models.reference_data.ReferenceData attribute)
T
term (seqann.feature_client.models.feature.Feature attribute)
(seqann.feature_client.models.feature_request.FeatureRequest attribute)
to_dict() (seqann.feature_client.models.feature.Feature method)
(seqann.feature_client.models.feature_request.FeatureRequest method)
to_path_value() (seqann.feature_client.api_client.ApiClient method)
to_str() (seqann.feature_client.models.feature.Feature method)
(seqann.feature_client.models.feature_request.FeatureRequest method)
U
update_params_for_auth() (seqann.feature_client.api_client.ApiClient method)
user_agent (seqann.feature_client.api_client.ApiClient attribute)
V
verbose (seqann.models.reference_data.ReferenceData attribute)
(seqann.seq_search.SeqSearch attribute)
verbosity (seqann.models.reference_data.ReferenceData attribute)
(seqann.seq_search.SeqSearch attribute)
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